PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G155400.1.p
Common NamePRUPE_ppa014930mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 282aa    MW: 31375.4 Da    PI: 8.1941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G155400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-20156190135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Prupe.7G155400.1.p 156 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 190
                         ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-19150202IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89150186IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-13153193No hitNo description
Gene3DG3DSA:3.30.50.107.0E-17154190IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.90E-13155187No hitNo description
PROSITE patternPS003440156181IPR000679Zinc finger, GATA-type
PfamPF003206.8E-18156190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQRCSSSSHG NMAGPCTCGV LHHTQSNSSF SMLFSMPNHH KPYDHHHHHH HETQHDHHNH  60
MYPFASSSSS VDCTLSLGTP STRLTENDVV LDDKRTRNER RSVSNFCWDL LQPKHHATSA  120
TSSHHHKNGS HRSGGNGNGV SNAVHSNNDP LLARRCANCD TTSTPLWRNG PRGPKSLCNA  180
CGIRFKKEER RATAAAANGG SSSVVGMDHN SHMLSQHHHN NSWMPHSQTQ KMPCFSPAMG  240
NEFRFMEDDT AHHENDATGI PFLSWRLNVT DRPSLVHDFT R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202952.10.0hypothetical protein PRUPE_ppa014930mg
SwissprotQ8LC792e-59GAT18_ARATH; GATA transcription factor 18
TrEMBLM5VSX00.0M5VSX0_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s12440.14e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-51GATA family protein